Publications
Media
- Afrah Shafquat Catching Feels Medium.com/Maslo (2020). Also republished at Insight
Academic Publications
Afrah Shafquat, Ronald G. Crystal, Jason G. Mezey Identifying novel associations in GWAS by hierarchical Bayesian latent variable detection of differentially misclassified phenotypes BMC Bioinformatics (2020)
Fumihiro Ogawa, Matthew S Walters, Afrah Shafquat, Sarah L O’Beirne, Robert J Kaner, Jason G Mezey, Haijun Zhang, Philip L Leopold, Ronald G Crystal Role of KRAS in regulating normal human airway basal cell differentiation Respiratory Research (2019)
Vicki N Meyers-Wallen, Adam R Boyko, Charles G Danko, Jennifer K Grenier, Jason G Mezey, Jessica J Hayward, Laura M Shannon, Chuan Gao, Afrah Shafquat, Edward J Rice, Shashikant Pujar, Stefanie Eggers, Thomas Ohnesorg, Andrew H Sinclair (2017) XX Disorder of Sex Development is associated with an insertion on chromosome 9 and downregulation of RSPO1 in dogs (Canis lupus familiaris) PLOS One (2017)
Tiffany Hsu, Regina Joice, Jose Vallarino, Galeb Abu-Ali, Erica M Hartmann, Afrah Shafquat, Casey DuLong, Catherine Baranowski, Dirk Gevers, Jessica L Green, Xochitl C Morgan, John D Spengler, Curtis Huttenhower Urban transit system microbial communities differ by surface type and interaction with humans and the environment Msystems (2016)
Eric A Franzosa, Tiffany Hsu, Alexandra Sirota-Madi, Afrah Shafquat, Galeb Abu-Ali, Xochitl C Morgan, Curtis Huttenhower Sequencing and beyond: integrating molecular’omics’ for microbial community profiling Nature Reviews Microbiology (2015)
Daniela Börnigen, Yo Sup Moon, Gholamali Rahnavard, Levi Waldron, Lauren McIver, Afrah Shafquat, Eric A Franzosa, Larissa Miropolsky, Christopher Sweeney, Xochitl C Morgan, Wendy S Garrett, Curtis Huttenhower A reproducible approach to high-throughput biological data acquisition and integration PeerJ (2015)
Regina Joice, Koji Yasuda, Afrah Shafquat, Xochitl C. Morgan, Curtis Huttenhower Determining Microbial Products and Identifying Molecular Targets in the Human Microbiome Cell Metabolism (2014)
Afrah Shafquat, Regina Joice, Sheri L Simmons, Curtis Huttenhower Functional and phylogenetic assembly of microbial communities in the human microbiome Trends in microbiology (2014)